Here is how to change document root for a domain in cPanel using .htaccess file:
RewriteEngine on
RewriteCond %{HTTP_HOST} ^domain.com$ [NC,OR]
RewriteCond %{HTTP_HOST} ^www.domain.com$
RewriteCond %{REQUEST_URI} !folder/
RewriteRule (.*) /folder/$1 [L]
*where domain.com is your domain name and folder is the new document root
For more .htaccess snippets check My .htaccess Cheatsheet

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